Complete and file the Certificate of Amendment with the Department of State. To update your New York LLC's Articles of Organization, you file a Certificate of Amendment form with the New York Department of State.The first step is to file a form called the Certificate of Amendment with the Department of State and wait for it to be approved. File amended articles. You can do this using a New York amendment or the Certificate of Change form. Free guide, filing instructions, and forms to file an amendment for corporation articles of incorporation with the New York Department of State. Craft a solid foundation for your LLC with our customizable operating agreement. Amendment of articles of organization. One obvious example is your LLC name. Some states have separate forms covering changes that others include in broader amendment forms.