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Alek Aksimentiev Marcos Sotomayor David Wells Current editor: Paween Mahinthichaichan November 2016 2 A current version of this tutorial is available at http://www.ks.uiuc.edu/Training/Tutorials/ Join the tutorial-l ks.uiuc.edu mailing list for additional help. CONTENTS 3 Contents 1 Building a Structural Model of KcsA 1.1 Downloading and Viewing the Protein . . 1.2 Examining the PDB File . . . . . . . . . . 1.3 Building the KcsA Tetramer . . . . . . . . 1.4 Generating PSF and PDB Files f.

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